Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer
نویسندگان
چکیده
منابع مشابه
Prediction-based fingerprints of protein-protein interactions.
The recognition of protein interaction sites is an important intermediate step toward identification of functionally relevant residues and understanding protein function, facilitating experimental efforts in that regard. Toward that goal, the authors propose a novel representation for the recognition of protein-protein interaction sites that integrates enhanced relative solvent accessibility (R...
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Despite recent progress in proteomics most protein complexes are still unknown. Identification of these complexes will help us understand cellular regulatory mechanisms and support development of new drugs. Therefore it is really important to establish detailed information about the composition and the abundance of protein complexes but existing algorithms can only give qualitative predictions....
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The post-genomic era has witnessed an explosion of protein sequences in the public databases; but this has not been complemented by the availability of genome-wide structure and function information, due to the technical difficulties and labor expenses incurred by existing experimental techniques. The rapid advancements in computer-based protein structure prediction methods have enabled automat...
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Transmembrane proteins allow cells to extensively communicate with the external world in a very accurate and specific way. They form principal nodes in several signaling pathways and attract large interest in therapeutic intervention, as the majority pharmaceutical compounds target membrane proteins. Thus, according to the current genome annotation methods, a detailed structural/functional char...
متن کاملProteome-wide prediction of overlapping small molecule and protein binding sites using structure.
Small molecules that modulate protein-protein interactions are of great interest for chemical biology and therapeutics. Here I present a structure-based approach to predict 'bi-functional' sites able to bind both small molecule ligands and proteins, in proteins of unknown structure. First, I develop a homology-based annotation method that transfers binding sites of known three-dimensional struc...
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ژورنال
عنوان ژورنال: Plant Physiology
سال: 2019
ISSN: 0032-0889,1532-2548
DOI: 10.1104/pp.18.01216